Installation IMOD software
Linux system - Ubuntu 22.04LTS
To download latest IMOD software, please visit IMOD for installation.
Require Java:
java -version
To install java:
sudo apt install default-jre
1. Download & Install imod
To install IMOD with default settings:
wget https://bio3d.colorado.edu/imod/AMD64-RHEL5/imod_4.11.24_RHEL7-64_CUDA8.0.sh
sh imod_4.11.24_RHEL7-64_CUDA8.0.sh
To activate IMOD, source IMOD-Linux.sh or IMOD-linux.csh:
source /usr/local/IMOD/IMOD-linux.sh
If you want to run IMOD temporarily:
mkdir imod_install
wget https://bio3d.colorado.edu/imod/AMD64-RHEL5/imod_4.11.24_RHEL7-64_CUDA8.0.sh
sh imod_4.11.24_RHEL7-64_CUDA8.0 -dir ./imod_install -skip
You can substitute testIMOD to any directory you want. It is good to install on a server.
2. Install PEET
PEET is a program developed by Dr. John Heumann. check website: PEET for more information
Useful programs used by PEET:
To install PEET:
wget https://bio3d.colorado.edu/ftp/PEET/linux/Particle_1.16.0a_linux.sh
wget https://bio3d.colorado.edu/ftp/PEET/linux/ParticleRuntimeV99_linux.tgz
sh Particle_1.16.0a_linux.sh
tar -xfzf ParticleRuntimeV99_linux.tgz -C /path/where/to/extract/
Add PEET onto the $PATH and reboot the system.
Check useful webpage for programs inside PEET: Program Description
- I am running all programs on Ubuntu 22.04 for workstation, Centos 7 on GPU server, and the following GPUs:
NVIDIA RTX 2080
NVIDIA A100